PPDB

PPDB	The Plant Proteome Database

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AT5G41870.1 Pectin lyase-like superfamily protein

Lab Annot.

GH28 (polygalacturonases)
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G23820.1 11 Arabidopsis thaliana 0 428 69 81 29 (5) S
AT3G62110.1 11 Arabidopsis thaliana 6E-146 445 49 68 78 (41) S
AT3G62110.2 11 Arabidopsis thaliana 6E-146 445 49 68 0 (0) S
Os02g15690.1 7 Oryza sativa 0 412 61 77 1 (1) S
Os05g50960.1 7 Oryza sativa 0 411 61 75 0 (0) S
Os01g43160.1 7 Oryza sativa 1E-174 411 61 76 0 (0) S
GRMZM2G052844_P02 3.21 Zea mays 0 410 61 75 2 (2) S
v1_GRMZM2G052844_P02 4a53 Zea mays 0 410 61 75 2 (2) S
v1_GRMZM2G052844_P01 4a53 Zea mays 0 410 61 75 2 (2) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Glyco_hydro_28(1) Pectate_lyase_3(2) Peroxidase_ext(2) VCBS(1)
TargetP:	Secreted (Class 1 C0.014; M0.016; S0.989; _0.023)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	449 aa (-cTP 377)
Molecular Weight	48.64 kDA(-cTP )
PI	6.89(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
WallDB-E.Jamet(cell wall reference proteome)
21413152(Xylem-sap (BrassicaOleracea))

Comparative Proteomics Data