PPDB

The Plant Proteome Database

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AT5G41870.1   Pectin lyase-like superfamily protein

Lab Annot. GH28 (polygalacturonases)
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G23820.1 11Arabidopsis thaliana0428698129 (5)S
AT3G62110.1 11Arabidopsis thaliana6E-146445496870 (41)S
AT3G62110.2 11Arabidopsis thaliana6E-14644549680 (0)S
Os02g15690.1 7Oryza sativa041261771 (1)S
Os05g50960.1 7Oryza sativa041161750 (0)S
Os01g43160.1 7Oryza sativa1E-17441161760 (0)S
GRMZM2G052844_P02 3.21Zea mays041061752 (2)S
v1_GRMZM2G052844_P02 4a53Zea mays041061752 (2)S
v1_GRMZM2G052844_P01 4a53Zea mays041061752 (2)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Glyco_hydro_28(1) Pectate_lyase_3(2) Peroxidase_ext(2) VCBS(1)
TargetP: Secreted (Class 1 C0.014; M0.016; S0.989; _0.023)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 449 aa (-cTP 377)
Molecular Weight 48.64 kDA(-cTP )
PI 6.89(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
WallDB-E.Jamet(cell wall reference proteome)
21413152(Xylem-sap (BrassicaOleracea))

Comparative Proteomics Data


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