PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G41600.1   VIRB2-interacting protein 3

Lab Annot. VIRB2-interacting protein 3
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G64090.1 11Arabidopsis thaliana1E-128259748212 (12)_
AT1G64090.2 11Arabidopsis thaliana2E-12327569777 (7)_
AT4G11220.1 11Arabidopsis thaliana8E-116275667751 (50)_
Os05g45050.1 7Oryza sativa3E-103257607315 (15)_
Os01g53520.1 7Oryza sativa2E-10025461749 (9)_
Os01g12650.1 7Oryza sativa8E-97268557040 (40)_
GRMZM2G031308_P02 3.21Zea mays9E-109260637614 (14)_
GRMZM2G031308_P01 3.21Zea mays9E-109260637614 (14)_
Zm00001eb153940_P001 agpv5Zea mays9E-10926063760 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: MRC1(2) NADHdeh_related(2) Reticulon(1)
TargetP: Cytoplasm (Class 2 C0.204; M0.058; S0.107; _0.881)
Predotar:
Subcel. Location:
TM-HMM prediction: 3 TMs
Aramemnon: 4 TMs
TAT position:
Length 257 aa (-cTP 216)
Molecular Weight 28.95 kDA(-cTP )
PI 9.14(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

14506206(Plasma Membrane proteome)
14506206(plasma membrane (phosphorylated))
15308754(plasma membrane (phosphorylated))
17660356(tonoplast (Brassica oleracea buds))
18463617(suspension cells-phosphorylated proteins)
19200160(flower-stage 12)
19376835(leaf phosphoproteins)
21533090(plasmodesmata-crude)
21325567(root-proteome (wt & det3))
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21515685(GreenCut2)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help