PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G40860.1   transmembrane protein

Lab Annot.
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G40860.2 11Arabidopsis thaliana1E-9013897970 (0)S
AT3G27210.1 11Arabidopsis thaliana2E-3721945560 (0)C
AT3G01860.1 11Arabidopsis thaliana4E-063855680 (0)C
Os01g69100.1 7Oryza sativa1E-1316935520 (0)_
Os04g31110.1 7Oryza sativa3E-093669830 (0)C
Zm00001eb143270_P002 agpv5Zea mays4E-1215034510 (0)_
Zm00001eb143270_P001 agpv5Zea mays4E-1215034510 (0)_
GRMZM2G044460_P01 3.21Zea mays4E-1215034510 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM:
TargetP: Cytoplasm (Class 3 C0.337; M0.043; S0.032; _0.815)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon: 1 TMs
TAT position:
Length 246 aa (-cTP 176)
Molecular Weight 27.77 kDA(-cTP )
PI 9.40(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help