PPDB

The Plant Proteome Database

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AT5G40640.1   transmembrane protein

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G27390.1 11Arabidopsis thaliana059075850 (0)S
AT3G27390.2 11Arabidopsis thaliana059075850 (0)S
AT4G12680.1 11Arabidopsis thaliana4E-14953946641 (1)S
Os04g40700.1 7Oryza sativa058555700 (0)S
Os04g40700.3 7Oryza sativa058555700 (0)S
Os04g40700.2 7Oryza sativa058555700 (0)S
Zm00001eb246250_P001 agpv5Zea mays058151670 (0)S
Zm00001eb079310_P001 agpv5Zea mays058455700 (0)S
Zm00001eb079310_P004 agpv5Zea mays058455700 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Tropomyosin(1)
TargetP: Secreted (Class 3 C0.000; M0.055; S0.918; _0.423)
Predotar:
Subcel. Location:
TM-HMM prediction: 6 TMs
Aramemnon: 5 TMs
TAT position:
Length 586 aa (-cTP 543)
Molecular Weight 64.64 kDA(-cTP )
PI 7.52(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1

* For details about the exprimental sources click here.

Published Proteomics Data

17317660(Plasma Membrane proteome)
20843791(DRM-enriched plasmamembrane)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help