PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G40560.1   protease Do-like protein
Lab Annot. DEG13 protease
Mapman: 29.5.5.1.1* protein.degradation.serine protease.PA.S1
Curated Location plastid (Pubmed: 25161662 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G36950.1 11Arabidopsis thaliana047957710 (0)M
AT1G65640.2 11Arabidopsis thaliana3E-17645856710 (0)M
AT1G65630.1 11Arabidopsis thaliana9E-16246552690 (0)M
Os05g34460.1 7Oryza sativa047855700 (0)C
Os06g12780.1 7Oryza sativa6E-10746442591 (1)C
Os02g50880.1 7Oryza sativa4E-10546442581 (1)C
GRMZM2G117615_P01 3.21Zea mays047955690 (0)C
Zm00001eb288180_P002 agpv5Zea mays047955690 (0)C
v1_GRMZM2G117615_P01 4a53Zea mays047955690 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: PDZ(2) PDZ_2(1) PDZ_3(2) Trypsin(1) Trypsin_2(1)
TargetP: Cytoplasm (Class 3 C0.201; M0.127; S0.026; _0.633)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 486 aa (-cTP 401)
Molecular Weight 54.15 kDA(-cTP )
PI 8.66(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help