PPDB

PPDB	The Plant Proteome Database

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AT5G40490.1 RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot.

RNA recognition motif (RRM)-containing protein
Mapman: 27.4 RNA.RNA binding

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G40490.2 11 Arabidopsis thaliana 0 375 98 98 0 (0) M
AT3G13224.2 11 Arabidopsis thaliana 4E-87 273 56 68 2 (1) _
AT3G13224.3 11 Arabidopsis thaliana 4E-86 273 56 68 0 (0) _
Os08g23120.1 7 Oryza sativa 1E-86 274 58 72 4 (4) _
Os08g38410.3 7 Oryza sativa 7E-83 323 50 62 0 (0) _
Os08g38410.1 7 Oryza sativa 2E-67 159 62 81 0 (0) _
Zm00001eb199330_P003 agpv5 Zea mays 3E-88 245 58 73 0 (0) _
v1_GRMZM2G050218_P01 4a53 Zea mays 3E-88 245 58 73 27 (27) _
GRMZM2G050218_P01 3.21 Zea mays 3E-88 245 58 73 8 (8) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Nup35_RRM(2) Nup35_RRM_2(2) RRM_1(2) RRM_7(2) SF3a60_bindingd(1)
TargetP:	Cytoplasm (Class 1 C0.093; M0.104; S0.119; _0.936)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	423 aa (-cTP 399)
Molecular Weight	42.41 kDA(-cTP )
PI	6.02(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
324	Detail								leaf [A. thaliana]	cell wall enriched	wild-type
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1529	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	wild-type (rep. 1)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
2010	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2011	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2012	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

15815986(Leaf)
19200160(flower-stage 12)
19525416(leaf (wt and clpr4-1 mutant))
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data