PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT5G40405.1 Tetratricopeptide repeat (TPR)-like superfamily protein

Lab Annot.

pentatricopeptide repeat (PPR) protein
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G40405.2 11 Arabidopsis thaliana 0 612 100 100 0 (0) _
AT5G66520.1 11 Arabidopsis thaliana 5E-172 596 40 62 4 (4) _
AT5G06540.1 11 Arabidopsis thaliana 3E-170 614 40 62 0 (0) S
Os01g51790.1 7 Oryza sativa 0 606 51 67 0 (0) M
Os07g02280.1 7 Oryza sativa 7E-159 603 40 58 0 (0) C
Os01g59890.1 7 Oryza sativa 2E-156 560 42 62 0 (0) _
Zm00001eb154870_P001 agpv5 Zea mays 0 616 50 68 0 (0) _
AC207628.4_FGP003 3.21 Zea mays 0 616 50 68 0 (0) _
v1_AC207628.4_FGP003 4a53 Zea mays 0 616 50 68 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DYW_deaminase(1) PPR(9) PPR_1(8) PPR_2(7) PPR_3(5) PPR_long(2) RPN7(2) TPR_14(3)
TargetP:	Cytoplasm (Class 3 C0.019; M0.224; S0.207; _0.805)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	612 aa (-cTP 533)
Molecular Weight	68.87 kDA(-cTP )
PI	7.09(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
621	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1

* For details about the exprimental sources click here.

Published Proteomics Data

22060019(phosphoproteome - N-starved seedlings)

Comparative Proteomics Data