PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G40340.1   Tudor/PWWP/MBT superfamily protein

Lab Annot. Tudor/PWWP/MBT protein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G40340.2 11Arabidopsis thaliana0100199990 (0)_
AT3G27860.1 11Arabidopsis thaliana2E-10355841540 (0)_
AT3G27860.2 11Arabidopsis thaliana2E-10355841540 (0)_
Os05g38810.1 7Oryza sativa6E-41180466230 (30)_
Os05g38800.1 7Oryza sativa2E-3118939570 (0)_
Os05g38800.2 7Oryza sativa2E-3118939570 (0)_
Zm00001eb351570_P005 agpv5Zea mays2E-4118146620 (0)_
Zm00001eb351570_P004 agpv5Zea mays2E-4118146620 (0)_
Zm00001eb351570_P002 agpv5Zea mays2E-4118146620 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DAGK_cat(1) PWWP(1)
TargetP: Cytoplasm (Class 2 C0.108; M0.094; S0.130; _0.878)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 1008 aa (-cTP 989)
Molecular Weight 114.24 kDA(-cTP )
PI 5.01(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1948Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

15496452(nucleolus)
19376835(leaf phosphoproteins)
20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)
21173025(root proteome)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help