PPDB

PPDB	The Plant Proteome Database

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AT5G40250.1 RING/U-box superfamily protein

Lab Annot.

RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G23980.1 11 Arabidopsis thaliana 3E-91 310 55 65 0 (0) C
AT2G18650.1 11 Arabidopsis thaliana 5E-61 326 40 55 0 (0) C
AT4G30400.1 11 Arabidopsis thaliana 1E-49 333 39 50 0 (0) C
Os02g50930.1 7 Oryza sativa 5E-104 353 50 64 0 (0) M
Os06g12680.1 7 Oryza sativa 8E-93 357 50 61 0 (0) _
Os06g07100.2 7 Oryza sativa 4E-65 363 45 55 0 (0) _
Zm00001eb372150_P001 agpv5 Zea mays 3E-99 361 51 60 0 (0) _
AC212353.4_FGP004 3.21 Zea mays 3E-99 361 51 60 0 (0) _
v1_AC212353.4_FGP004 4a53 Zea mays 3E-99 361 51 60 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF1764(1) FANCL_C(1) HemY_N(1) MBOAT_2(1) Prok-RING_1(2) Prok-RING_4(1) RINGv(1
TargetP:	Cytoplasm (Class 3 C0.178; M0.079; S0.018; _0.698)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	376 aa (-cTP 340)
Molecular Weight	41.79 kDA(-cTP )
PI	5.74(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data