PPDB

PPDB	The Plant Proteome Database

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AT5G40200.1 DegP protease 9

Lab Annot.

DEG9 protease
Mapman: 29.5.5.1.1* protein.degradation.serine protease.PA.S1

Curated Location

nucleus (Pubmed: 25161662 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G47940.2 11 Arabidopsis thaliana 3E-176 462 52 73 401 (272) C
AT2G47940.1 11 Arabidopsis thaliana 3E-176 462 52 73 426 (297) C
AT5G36950.1 11 Arabidopsis thaliana 1E-153 552 45 62 0 (0) M
Os02g50880.1 7 Oryza sativa 0 587 75 82 1 (1) C
Os06g12780.1 7 Oryza sativa 0 474 86 94 1 (1) C
Os05g05480.1 7 Oryza sativa 1E-180 462 53 72 34 (34) C
AC212112.4_FGP002 3.21 Zea mays 0 545 78 85 0 (0) C
v1_AC212112.4_FGP002 4a53 Zea mays 0 545 78 85 10 (10) C
Zm00001eb194670_P002 agpv5 Zea mays 0 531 80 88 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	PDZ(1) PDZ_2(2) PDZ_3(1) PDZ_6(2) Peptidase_S46(1) Peptidase_S7(1) Trypsin(1) Tr
TargetP:	Chloroplast (Class 5 C0.559; M0.052; S0.002; _0.459)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	592 aa (-cTP 528)
Molecular Weight	65.15 kDA(-cTP 58.24)
PI	6.34(-cTP 5.68)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2238	Detail								seedlings [A. thaliana]	total tissue	gfs9
2255	Detail								leaf [A. thaliana]	total seedlings	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
15496452(nucleolus)
19546170(mature pollen grains)
19376835(leaf phosphoproteins)
19995723(chloroplast reference proteome)
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data