PPDB

The Plant Proteome Database

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AT5G40190.1   RNA ligase/cyclic nucleotide phosphodiesterase family protein

Lab Annot.
Mapman: 30.3 signalling.calcium
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G28140.1 11Arabidopsis thaliana4E-8718480890 (0)_
AT3G28140.2 11Arabidopsis thaliana2E-6415377870 (0)_
Os09g20860.1 7Oryza sativa1E-5918452716 (6)_
v1_GRMZM2G110358_P01 4a53Zea mays3E-5319746640 (0)C
Zm00001eb098850_P005 agpv5Zea mays3E-5319746640 (0)C
Zm00001eb098850_P004 agpv5Zea mays3E-5319746640 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: 2_5_RNA_ligase2(1) AKAP7_NLS(1) LigT_PEase(1) Mhr1(1)
TargetP: Cytoplasm (Class 3 C0.115; M0.092; S0.013; _0.692)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 183 aa (-cTP 109)
Molecular Weight 20.62 kDA(-cTP )
PI 4.86(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help