PPDB

PPDB	The Plant Proteome Database

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AT5G39980.1 Tetratricopeptide repeat (TPR)-like superfamily protein

Lab Annot.

Pentatricopeptide repeat (PPR) protein
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein

Curated Location

plastid nucleoid (Pubmed: 23198870 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G62930.1 11 Arabidopsis thaliana 9E-64 451 30 53 8 (0) M
AT1G62910.1 11 Arabidopsis thaliana 2E-59 449 28 52 0 (0) M
AT1G63130.1 11 Arabidopsis thaliana 2E-58 439 28 51 0 (0) M
Os01g61630.1 7 Oryza sativa 0 632 48 69 0 (0) C
Os05g19380.1 7 Oryza sativa 4E-53 554 23 46 16 (16) C
Os07g42880.1 7 Oryza sativa 2E-51 548 26 46 0 (0) M
GRMZM2G475743_P01 3.21 Zea mays 0 609 48 70 21 (21) C
v1_GRMZM2G475743_P01 4a53 Zea mays 0 609 48 70 14 (14) C
Zm00001eb148940_P001 agpv5 Zea mays 0 609 48 70 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ATP13(3) Clathrin(5) DUF1348(1) DUF1922(2) ECSIT(6) FtsK_gamma(2) MRP-S27(3) Mtf
TargetP:	Chloroplast (Class 2 C0.800; M0.044; S0.058; _0.055)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	678 aa (-cTP 614)
Molecular Weight	78.27 kDA(-cTP 71.07)
PI	8.29(-cTP 7.31)

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
2145	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2151	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data