PPDB

PPDB	The Plant Proteome Database

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AT5G39910.1 Pectin lyase-like superfamily protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G15720.3 11 Arabidopsis thaliana 4E-76 413 36 49 0 (0) S
AT3G15720.1 11 Arabidopsis thaliana 4E-76 419 35 48 0 (0) S
AT3G15720.2 11 Arabidopsis thaliana 2E-74 413 36 49 0 (0) S
Os01g33300.1 7 Oryza sativa 6E-66 427 33 50 0 (0) S
Os01g66710.1 7 Oryza sativa 2E-65 395 33 49 0 (0) S
Os02g10300.1 7 Oryza sativa 2E-64 391 32 52 0 (0) S
Zm00001eb275880_P001 agpv5 Zea mays 3E-68 426 32 50 0 (0) S
GRMZM2G160626_P01 3.21 Zea mays 3E-68 426 32 50 10 (10) S
v1_GRMZM2G160626_P01 4a53 Zea mays 3E-68 426 32 50 8 (7) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(1) Glyco_hydro_28(2) NosD(2) Pectate_lyase_3(1) Pectate_lyase_4(3)
TargetP:	Secreted (Class 1 C0.005; M0.038; S0.992; _0.017)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	373 aa (-cTP 350)
Molecular Weight	41.95 kDA(-cTP )
PI	6.18(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data