PPDB

The Plant Proteome Database

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AT5G39550.1   Zinc finger (C3HC4-type RING finger) family protein

Lab Annot.
Mapman: 27.3.11 RNA.regulation of transcription.C2H2 zinc finger family
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G66050.1 11Arabidopsis thaliana062591930 (0)_
AT1G66040.1 11Arabidopsis thaliana062491940 (0)_
AT1G57820.1 11Arabidopsis thaliana064367770 (0)_
Os05g01230.1 7Oryza sativa060060730 (0)_
Os04g22240.1 7Oryza sativa060254670 (0)C
Os07g25450.1 7Oryza sativa2E-1617435500 (0)C
Zm00001eb304730_P001 agpv5Zea mays059957700 (0)_
v1_GRMZM2G162211_P01 4a53Zea mays059957700 (0)_
Zm00001eb267610_P001 agpv5Zea mays045363740 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: PHD(2) Prok-RING_4(3) SAD_SRA(1) zf-C3HC4(2) zf-C3HC4_2(2) zf-C3HC4_3(4) zf-C3HC
TargetP: Cytoplasm (Class 3 C0.332; M0.054; S0.041; _0.767)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 617 aa (-cTP 551)
Molecular Weight 68.30 kDA(-cTP )
PI 7.85(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help