PPDB

 The Plant Proteome Database

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AT5G39510.1   Vesicle transport v-SNARE family protein
Lab Annot. vesicle transport v-SNARE 11 (VTI11) - multiple locations - vacuole-Golgi-ER
Mapman: 31.4 cell.vesicle transport
Curated Location extracellular (Pubmed: 16947054 11226186 16947054 11226186 11226186 15797025 15342965 )
golgi (Pubmed: 16947054 11226186 16947054 11226186 11226186 15797025 15342965 )
vacuole (Pubmed: 16947054 11226186 16947054 11226186 11226186 15797025 15342965 )

TAIR curated location: late endosome & trans-Golgi network transport vesicle & Golgi trans face11115874,11826297,10397763
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G29100.3 11Arabidopsis thaliana2E-13722183920 (0)_
AT3G29100.1 11Arabidopsis thaliana6E-10617085930 (0)S
AT3G29100.5 11Arabidopsis thaliana8E-10516786930 (0)_
Os01g51120.1 7Oryza sativa2E-104219688621 (21)_
Os01g37980.1 7Oryza sativa8E-9022059792 (2)_
Os01g51120.2 7Oryza sativa1E-50117658514 (14)_
GRMZM5G894156_P04 3.21Zea mays3E-114219718525 (25)_
GRMZM5G894156_P03 3.21Zea mays3E-114219718525 (25)_
GRMZM5G894156_P02 3.21Zea mays3E-114219718525 (25)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Arg_decarbox_C(1) Cauli_AT(1) DUF2721(1) Exo84_C(2) Exonuc_VII_L(1) Fusion_gly(1
TargetP: Cytoplasm (Class 2 C0.160; M0.070; S0.035; _0.832)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 221 aa (-cTP 205)
Molecular Weight 24.95 kDA(-cTP )
PI 9.47(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
352Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1345Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 1)
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1348Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 1)
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1410Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 wild-type
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2272Detail       seedlings [A. thaliana] total tissue wild-type
2274Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 15539469(vacuole)
15815986(Leaf)
16618929(vacuole-LOPIT-callus)
17151019(vacuole - suspension cell)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
21693672(wound-regulated leaf proteome (wt))
21166475(cytosolic-fractions-crude)
21173025(root proteome)
21988472(vacuole (unfiltered data))

Comparative Proteomics Data

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