PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G38930.1   RmlC-like cupins superfamily protein

Lab Annot.
Mapman: 20.2.99 stress.abiotic.unspecified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G38940.2 11Arabidopsis thaliana6E-14222395970 (0)_
AT5G38940.1 11Arabidopsis thaliana6E-142223959741 (24)S
AT5G38910.1 11Arabidopsis thaliana1E-12022176840 (0)S
Os02g29000.1 7Oryza sativa1E-8521061740 (0)S
Os02g29020.1 7Oryza sativa5E-8419964750 (0)S
Os08g09040.1 7Oryza sativa2E-7822261680 (0)S
Zm00001eb202970_P001 agpv5Zea mays3E-7822160720 (0)S
v1_GRMZM2G075925_P01 4a53Zea mays3E-7822160720 (0)S
GRMZM2G075925_P01 3.21Zea mays3E-7822160720 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Cupin_1(1) Cupin_2(1)
TargetP: Secreted (Class 1 C0.012; M0.020; S0.978; _0.018)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 223 aa (-cTP 146)
Molecular Weight 23.63 kDA(-cTP )
PI 6.82(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

15593128(Cell Wall proteome)
WallDB-E.Jamet(cell wall reference proteome)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help