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AT5G38530.1 tryptophan synthase beta type 2

Lab Annot.

tryptophan synthase beta type 2
Mapman: 13.1.6.5.5 amino acid metabolism.synthesis.aromatic aa.tryptophan.tryptophan synthase

Curated Location

plastid stroma (Pubmed: 23198870 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G27070.1 11 Arabidopsis thaliana 2E-30 386 30 43 49 (36) C
AT5G54810.1 11 Arabidopsis thaliana 1E-29 380 30 43 321 (207) C
AT5G28237.1 11 Arabidopsis thaliana 9E-26 333 31 44 2 (2) M
Os06g42560.3 7 Oryza sativa 0 493 72 83 4 (4) C
Os06g42560.1 7 Oryza sativa 0 493 72 83 4 (4) C
Os06g42560.2 7 Oryza sativa 0 441 78 89 4 (4) C
GRMZM2G054465_P01 3.21 Zea mays 0 397 79 90 0 (0) _
v1_GRMZM2G054465_P01 4a53 Zea mays 0 397 79 90 0 (0) _
Zm00001eb387730_P001 agpv5 Zea mays 0 371 79 90 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	PALP(1)
TargetP:	Chloroplast (Class 3 C0.678; M0.073; S0.005; _0.256)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	506 aa (-cTP 453)
Molecular Weight	55.74 kDA(-cTP 49.98)
PI	6.79(-cTP 6.21)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1465	Detail								leaf [A. thaliana]	co-IP GST-ClpS stroma	clpc1 x clps (rep. 1)
1467	Detail								leaf [A. thaliana]	co-IP GST-ClpS stroma	clpc1 x clps (rep. 2)
1469	Detail								leaf [A. thaliana]	co-IP GST-ClpS stroma	clpc1 x clps (rep. 3)
1479	Detail								leaf [A. thaliana]	co-IP GST-ClpS stroma	clpc1 x clps (rep. 6)
1482	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 1)
1486	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 3)
1526	Detail								leaf [A. thaliana]	co-IP GST-ClpS 100ug bait stroma	clpc1 x clps (rep. 2)
1941	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1942	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1943	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1944	Detail								leaf [A. thaliana]	stroma UVR stroma	UVR
1947	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
2012	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2115	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2252	Detail								seedlings [A. thaliana]	total tissue	gfs9
2253	Detail								seedlings [A. thaliana]	total tissue	atg5
2306	Detail								[A. thaliana]		Clp C1 TRAP
2311	Detail								leaf [A. thaliana]	PG plastoglobule
2312	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane
2313	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane
2315	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane
2316	Detail								leaf [A. thaliana]	PG plastoglobule
2317	Detail								leaf [A. thaliana]	PG plastoglobule
2319	Detail								leaf [A. thaliana]	PG plastoglobule
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

19114538(guard cells Arabidopsis leaf)
21173025(root proteome)

Comparative Proteomics Data