PPDB

 The Plant Proteome Database

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AT5G38530.1   tryptophan synthase beta type 2
Lab Annot. tryptophan synthase beta type 2
Mapman: 13.1.6.5.5 amino acid metabolism.synthesis.aromatic aa.tryptophan.tryptophan synthase
Curated Location plastid stroma (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G27070.1 11Arabidopsis thaliana2E-30386304352 (32)C
AT5G54810.1 11Arabidopsis thaliana1E-293803043367 (186)C
AT5G28237.1 11Arabidopsis thaliana9E-2633331448 (2)M
Os06g42560.3 7Oryza sativa049372834 (4)C
Os06g42560.1 7Oryza sativa049372834 (4)C
Os06g42560.2 7Oryza sativa044178894 (4)C
GRMZM2G054465_P01 3.21Zea mays039779900 (0)_
v1_GRMZM2G054465_P01 4a53Zea mays039779900 (0)_
Zm00001eb387730_P001 agpv5Zea mays037179900 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: PALP(1)
TargetP: Chloroplast (Class 3 C0.678; M0.073; S0.005; _0.256)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 506 aa (-cTP 453)
Molecular Weight 55.74 kDA(-cTP 49.98)
PI 6.79(-cTP 6.21)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1465Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 1)
1467Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 2)
1469Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 3)
1479Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 6)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1526Detail       leaf [A. thaliana] co-IP GST-ClpS 100ug bait stromaclpc1 x clps (rep. 2)
1941Detail       leaf [A. thaliana] stroma WT stromawild-type
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
1944Detail       leaf [A. thaliana] stroma UVR stromaUVR
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2115Detail       leaf [A. thaliana] Stroma stromacGep
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2306Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 19114538(guard cells Arabidopsis leaf)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help