PPDB

PPDB	The Plant Proteome Database

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AT5G38470.2 Rad23 UV excision repair protein family

Lab Annot.

Rad23 UV excision repair protein family
Mapman: 28.2 DNA.repair

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G38470.1 11 Arabidopsis thaliana 0 313 100 100 36 (8) _
AT3G02540.3 11 Arabidopsis thaliana 2E-141 352 62 73 29 (7) _
AT3G02540.1 11 Arabidopsis thaliana 2E-140 353 62 72 31 (9) _
Os09g24200.2 7 Oryza sativa 1E-119 328 60 73 0 (0) _
Os09g24200.1 7 Oryza sativa 6E-118 329 60 72 0 (0) _
Os08g33340.1 7 Oryza sativa 3E-108 334 57 70 7 (7) _
GRMZM2G061620_P01 3.21 Zea mays 9E-118 321 59 72 1 (1) _
v1_GRMZM2G061620_P01 4a53 Zea mays 9E-118 321 59 72 1 (1) _
GRMZM2G061620_P02 3.21 Zea mays 1E-116 321 59 72 1 (1) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CUE(1) DUF2407(1) Rad60-SLD(1) Rad60-SLD_2(1) UBA(1) ubiquitin(1) Ubiquitin_4(1)
TargetP:	Cytoplasm (Class 1 C0.039; M0.099; S0.033; _0.923)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	332 aa (-cTP 313)
Molecular Weight	34.71 kDA(-cTP )
PI	4.85(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1566	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	k2k3
2245	Detail								seedlings [A. thaliana]	total tissue	wild-type
2246	Detail								seedlings [A. thaliana]	total tissue	gfs9
2247	Detail								seedlings [A. thaliana]	total tissue	atg5
2249	Detail								seedlings [A. thaliana]	total tissue	gfs9
2250	Detail								seedlings [A. thaliana]	total tissue	atg5
2251	Detail								seedlings [A. thaliana]	total tissue	wild-type
2252	Detail								seedlings [A. thaliana]	total tissue	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

17407188(cotyledon)
18814325(cotyledons)
19200160(flower-stage 12)
19546170(mature pollen grains)
20118269(developing seeds)
19429840(ubiquitinated or associated with ubiquitinated proteins (seedlings))
17216043(leaf)
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data