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PPDB	The Plant Proteome Database

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AT5G38470.1 Rad23 UV excision repair protein family

Lab Annot.

Rad23 UV excision repair protein family
Mapman: 28.2 DNA.repair

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G38470.2 11 Arabidopsis thaliana 0 313 100 100 23 (12) _
AT3G02540.3 11 Arabidopsis thaliana 1E-179 423 64 74 24 (11) _
AT3G02540.1 11 Arabidopsis thaliana 1E-178 424 64 74 26 (13) _
Os09g24200.2 7 Oryza sativa 6E-159 393 62 75 0 (0) _
Os09g24200.1 7 Oryza sativa 5E-157 394 62 75 0 (0) _
Os08g33340.1 7 Oryza sativa 5E-146 399 59 72 7 (7) _
Zm00001eb379990_P004 agpv5 Zea mays 8E-156 392 62 73 0 (0) _
GRMZM2G061620_P02 3.21 Zea mays 1E-151 388 61 74 1 (1) _
Zm00001eb312260_P002 agpv5 Zea mays 1E-151 388 61 74 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CUE(1) DUF2407(1) Rad60-SLD(1) Rad60-SLD_2(1) UBA(2) UBA_3(2) ubiquitin(1) Ubiqu
TargetP:	Cytoplasm (Class 1 C0.039; M0.099; S0.033; _0.923)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	378 aa (-cTP 359)
Molecular Weight	40.07 kDA(-cTP )
PI	4.58(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1566	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	k2k3
2245	Detail								seedlings [A. thaliana]	total tissue	wild-type
2246	Detail								seedlings [A. thaliana]	total tissue	gfs9
2247	Detail								seedlings [A. thaliana]	total tissue	atg5
2249	Detail								seedlings [A. thaliana]	total tissue	gfs9
2250	Detail								seedlings [A. thaliana]	total tissue	atg5
2251	Detail								seedlings [A. thaliana]	total tissue	wild-type
2252	Detail								seedlings [A. thaliana]	total tissue	gfs9
2310	Detail								leaf [A. thaliana]	PG plastoglobule
2311	Detail								leaf [A. thaliana]	PG plastoglobule
2316	Detail								leaf [A. thaliana]	PG plastoglobule
2317	Detail								leaf [A. thaliana]	PG plastoglobule

* For details about the exprimental sources click here.

Published Proteomics Data

16358359(cell suspension (M&Skoog))
17407188(cotyledon)
18814325(cotyledons)
19200160(flower-stage 12)
19546170(mature pollen grains)
20118269(developing seeds)
19429840(ubiquitinated or associated with ubiquitinated proteins (seedlings))
17216043(leaf)
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data