PPDB

 The Plant Proteome Database

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AT5G38290.1   Peptidyl-tRNA hydrolase family protein
Lab Annot. peptidyl-tRNA hydrolase
Mapman: 29.2.5 protein.synthesis.release
Curated Location plastid stroma (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G38290.2 11Arabidopsis thaliana024610010021 (17)C
AT5G16140.1 11Arabidopsis thaliana2E-11024166774 (3)_
AT5G16140.2 11Arabidopsis thaliana2E-11024166774 (3)_
Os03g22610.2 7Oryza sativa5E-7119255710 (0)M
Os01g49900.1 7Oryza sativa3E-6718951702 (2)M
Os05g47630.1 7Oryza sativa2E-6218947690 (0)M
Zm00001eb335300_P001 agpv5Zea mays3E-10820871820 (0)C
Zm00001eb335300_P003 agpv5Zea mays3E-10820871820 (0)C
GRMZM2G132021_P03 3.21Zea mays3E-108208718247 (44)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Pept_tRNA_hydro(1)
TargetP: Chloroplast (Class 3 C0.821; M0.050; S0.130; _0.247)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 246 aa (-cTP 212)
Molecular Weight 27.26 kDA(-cTP 23.43)
PI 9.46(-cTP 8.88)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1179Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1180Detail       leaf [A. thaliana] co-IP OEC23 stromaclpr2-1
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1636Detail       leaf [A. thaliana] Stroma stromaclpt1-2
1639Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
1672Detail        [A. thaliana]  
2291Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help