PPDB

PPDB	The Plant Proteome Database

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AT5G38120.1 AMP-dependent synthetase and ligase family protein

Lab Annot.

At4CL11 - 4-coumarate--CoA ligase
Mapman: 16.2.1.3 secondary metabolism.phenylpropanoids.lignin biosynthesis.4CL

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G38120.3 11 Arabidopsis thaliana 0 514 100 100 0 (0) C
AT5G38120.4 11 Arabidopsis thaliana 0 479 100 100 0 (0) C
AT5G38120.2 11 Arabidopsis thaliana 0 479 100 100 0 (0) C
Os03g04000.1 7 Oryza sativa 0 552 51 69 7 (7) _
Os01g67540.1 7 Oryza sativa 1E-139 570 41 60 0 (0) C
Os03g05780.1 7 Oryza sativa 4E-127 490 43 61 8 (8) C
Zm00001eb002570_P001 agpv5 Zea mays 0 551 52 69 0 (0) M
GRMZM2G096020_P01 3.21 Zea mays 0 551 52 69 59 (0) M
v1_GRMZM2G096020_P01 4a53 Zea mays 0 551 52 69 1 (1) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AMP-binding(1) AMP-binding_C(2)
TargetP:	Chloroplast (Class 3 C0.710; M0.185; S0.024; _0.201)
Predotar:
Subcel. Location:	Thylakoid membrane
TM-HMM prediction:	1 TMs
Aramemnon:	2 TMs
TAT position:
Length	550 aa (-cTP 504) (-lTP 477)
Molecular Weight	60.39 kDA(-cTP 55.31)(-lTP 52.24)
PI	8.87(-cTP 8.62)(-lTP 8.636)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1478	Detail								leaf [A. thaliana]	co-IP GST-ClpSmut stroma	clpc1 x clps (rep. 5)

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data