PPDB

The Plant Proteome Database

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AT5G38070.1   RING/FYVE/PHD zinc finger superfamily protein

Lab Annot. zinc finger (C3HC4-type RING finger) protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G01275.4 11Arabidopsis thaliana2E-5623942570 (0)_
AT2G01275.2 11Arabidopsis thaliana2E-5623942570 (0)_
AT2G01275.1 11Arabidopsis thaliana2E-5623942570 (0)_
Os01g03100.2 7Oryza sativa2E-6723644630 (0)_
Os01g03100.1 7Oryza sativa4E-6522445630 (0)_
Os02g36740.3 7Oryza sativa4E-4218842600 (0)_
Zm00001eb334850_P003 agpv5Zea mays2E-6323941620 (0)_
Zm00001eb334850_P002 agpv5Zea mays2E-6323941620 (0)_
GRMZM2G003930_P04 3.21Zea mays2E-6323941620 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF3675(1) RINGv(1) zf-RING_2(1)
TargetP: Cytoplasm (Class 2 C0.109; M0.106; S0.113; _0.869)
Predotar:
Subcel. Location:
TM-HMM prediction: 2 TMs
Aramemnon: 2 TMs
TAT position:
Length 259 aa (-cTP 232)
Molecular Weight 29.05 kDA(-cTP )
PI 4.95(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1393Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1449Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help