PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G37890.1   Protein with RING/U-box and TRAF-like domain

Lab Annot.
Mapman: 33.99 development.unspecified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G37910.1 11Arabidopsis thaliana3E-11925964760 (0)_
AT5G37870.1 11Arabidopsis thaliana2E-10728956680 (0)_
AT5G62800.1 11Arabidopsis thaliana6E-8726946670 (0)_
Os06g20610.1 7Oryza sativa2E-2422929460 (0)_
Os01g55640.1 7Oryza sativa1E-2318032470 (0)_
Os01g03290.1 7Oryza sativa2E-2315335510 (0)_
Zm00001eb132940_P001 agpv5Zea mays3E-2824628480 (0)_
GRMZM2G008123_P01 3.21Zea mays3E-2824628480 (0)_
v1_GRMZM2G008123_P01 4a53Zea mays3E-2824628480 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Sina(1) zf-C3HC4(1) zf-C3HC4_3(1) zf-RING_UBOX(2)
TargetP: Cytoplasm (Class 4 C0.358; M0.063; S0.045; _0.589)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 286 aa (-cTP 283)
Molecular Weight 32.05 kDA(-cTP )
PI 8.23(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help