PPDB

 The Plant Proteome Database

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AT5G36170.1   high chlorophyll fluorescent 109
Lab Annot. peptide chain release factor, AtPRFB - HCF109
Mapman: 29.2.5 protein.synthesis.release
Curated Location plastid (Pubmed: 23198870 12468741 18431481 )

TAIR curated location: chloroplast12468741
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G36170.2 11Arabidopsis thaliana0456999980 (45)C
AT5G36170.3 11Arabidopsis thaliana03569910078 (45)C
AT5G36170.4 11Arabidopsis thaliana035699990 (0)C
Os07g36250.1 7Oryza sativa037978894 (4)C
Os07g36250.2 7Oryza sativa037279904 (4)_
Os07g36250.3 7Oryza sativa037279902 (2)_
Zm00001eb323570_P001 agpv5Zea mays038676890 (0)C
v1_GRMZM2G472382_P01 4a53Zea mays038576892 (2)M
GRMZM2G472382_P01 3.21Zea mays038576899 (7)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: ABC_tran_CTD(2) CAMP_factor(2) DUF3585(2) PCRF(1) RF-1(2)
TargetP: Chloroplast (Class 5 C0.439; M0.243; S0.005; _0.115)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 456 aa (-cTP 398)
Molecular Weight 50.98 kDA(-cTP 44.71)
PI 5.35(-cTP 5.06)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
544Detail       leaf [A. thaliana] stroma (FPLC) <600 kDa (LMA) wild-type
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
622Detail       leaf [A. thaliana] total leaf tissue wild-type
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1416Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1455Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
1463Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 3)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1948Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2085Detail       Total leaf [A. thaliana] total soluble wt & clpt1xclpt2
2112Detail       leaf [A. thaliana] Stroma stromawt
2114Detail       leaf [A. thaliana] Stroma stromawt
2290Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT
2300Detail        [A. thaliana] Clp C1 TRAP
2303Detail        [A. thaliana] Clp C1 WT
2310Detail       leaf [A. thaliana] PG plastoglobule 
2311Detail       leaf [A. thaliana] PG plastoglobule 
2312Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2314Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2316Detail       leaf [A. thaliana] PG plastoglobule 
2317Detail       leaf [A. thaliana] PG plastoglobule 
2318Detail       leaf [A. thaliana] PG plastoglobule 
2319Detail       leaf [A. thaliana] PG plastoglobule 
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
19995723(chloroplast reference proteome)

Comparative Proteomics Data

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