PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G35840.1   phytochrome C

Lab Annot. phytochrome C (PHYC)
Mapman: 30.11 signalling.light
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G09570.4 11Arabidopsis thaliana0111451710 (0)M
AT1G09570.5 11Arabidopsis thaliana0111451710 (0)M
AT1G09570.6 11Arabidopsis thaliana0111451710 (0)M
Os03g54084.1 7Oryza sativa0111759770 (0)M
Os03g19590.1 7Oryza sativa0111450690 (0)M
Os03g51030.1 7Oryza sativa0110149680 (0)M
GRMZM2G057935_P01 3.21Zea mays0111759770 (0)M
Zm00001eb057490_P002 agpv5Zea mays0111759770 (0)M
v1_GRMZM2G057935_P01 4a53Zea mays0111759770 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: GAF(2) HATPase_c(1) PAS(3) PAS_10(2) PAS_2(2) PAS_3(2) PAS_4(2) PAS_8(3) PAS_9(3
TargetP: Mitochondria (Class 5 C0.491; M0.513; S0.014; _0.086)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 1111 aa (-cTP 1091)
Molecular Weight 123.72 kDA(-cTP )
PI 5.73(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help