PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G35680.1   Nucleic acid-binding%2C OB-fold-like protein

Lab Annot. Nucleic acid-binding, OB-fold-like protein
Mapman: 29.2.3 protein.synthesis.initiation
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G35680.2 11Arabidopsis thaliana1E-1001451001007 (3)_
AT2G04520.1 11Arabidopsis thaliana1E-90145939610 (5)_
AT5G35680.3 11Arabidopsis thaliana1E-891291001006 (2)_
Os06g23440.1 7Oryza sativa2E-80146829123 (23)_
Os02g19770.1 7Oryza sativa4E-8014583910 (0)_
v1_GRMZM2G349996_P01 4a53Zea mays4E-84145829212 (11)_
Zm00001eb236830_P001 agpv5Zea mays4E-8414582920 (0)_
GRMZM2G349996_P01 3.21Zea mays4E-84145829214 (14)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: eIF-1a(1)
TargetP: Cytoplasm (Class 2 C0.079; M0.154; S0.037; _0.926)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 145 aa (-cTP 131)
Molecular Weight 16.59 kDA(-cTP )
PI 4.89(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
2219Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

16400686(floem_sap B. napa)
19292762(Ubiquitin-affinity seedling (10 d))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help