PPDB

 The Plant Proteome Database

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AT5G35530.1   Ribosomal protein S3 family protein
Lab Annot. 40S ribosomal protein S3 (RPS3C)
Mapman: 29.2.1.2.1.3 protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S3
Curated Location cytosol

TAIR curated location: cytosolic ribosome (sensu Eukaryota)15821981
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G31610.1 11Arabidopsis thaliana1E-1642509192435 (313)_
AT3G53870.1 11Arabidopsis thaliana1E-1542499093335 (266)_
Os03g38000.1 7Oryza sativa1E-145217899569 (69)_
Os07g41750.1 7Oryza sativa2E-145220889439 (39)_
Os07g41750.2 7Oryza sativa5E-129199879314 (14)_
v1_GRMZM2G074300_P01 4a53Zea mays2E-1472179096183 (182)_
GRMZM2G074300_P01 3.21Zea mays2E-1472179096182 (165)_
GRMZM2G099352_P03 3.21Zea mays9E-1462178996194 (178)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Coilin_N(1) KH_2(1) Ribosomal_S3_C(2) UN_NPL4(1)
TargetP: Cytoplasm (Class 4 C0.018; M0.119; S0.333; _0.609)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 248 aa (-cTP 236)
Molecular Weight 27.46 kDA(-cTP )
PI 9.57(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
310Detail       leaf [A. thaliana] total leaf tissue clpr2-1:R2-TAPlong
324Detail       leaf [A. thaliana] cell wall enriched wild-type
351Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
352Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
355Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1018Detail        [aphid]  
1091Detail        [A. thaliana] R4Strep Complemented
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1393Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1409Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 wild-type
1410Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 wild-type
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1413Detail       leaf [A. thaliana] total leaf tissue -114 rep1tR1 wild-type
1415Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.1 clpr2-1
1416Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1423Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1445Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 1)
1446Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 2)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
1449Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 2)
1450Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1532Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP clps (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1535Detail       leaf [A. thaliana] wild-type
1539Detail       leaf [A. thaliana] wild-type
1744Detail        [A. thaliana] Mep-6
1749Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1756Detail       leaf [A. thaliana] total leaf tissue Col_0
1757Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1758Detail       leaf [A. thaliana] total leaf tissue DXS_Flag+fosmidomycin
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
1875Detail       Total leaf [A. thaliana] total soluble wild-type
1907Detail       leaf [A. thaliana] total leaf tissue Col_0
1908Detail       leaf [A. thaliana] total leaf tissue clb19_myc
1912Detail       leaf [A. thaliana] total leaf tissue clb19_myc
1931Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1932Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1948Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2000Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2193Detail        [A. thaliana] total soluble P3-strepII 26
2208Detail       leaf [A. thaliana] total leaf tissue Clp P5 strepII
2209Detail       leaf [A. thaliana] total leaf tissue Clp P5 Trapst 10
2211Detail       leaf [A. thaliana] total leaf tissue Clp P5 Trapst 12
2215Detail       leaf [A. thaliana] total leaf tissue Clp P5 trap st
2222Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2224Detail       leaf [A. thaliana] total leaf tissue Clp P3 strep
2225Detail       leaf [A. thaliana] total leaf tissue Clp P3 trap
2226Detail       leaf [A. thaliana] total leaf tissue wild-type
2236Detail       seedlings [A. thaliana] total tissue gfs9
2237Detail       seedlings [A. thaliana] total tissue gfs9
2238Detail       seedlings [A. thaliana] total tissue gfs9
2239Detail       seedlings [A. thaliana] total tissue gfs9
2241Detail       seedlings [A. thaliana] total tissue gfs9
2242Detail       seedlings [A. thaliana] total tissue gfs9
2243Detail       seedlings [A. thaliana] total tissue gfs9
2244Detail       seedlings [A. thaliana] total tissue gfs9
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2254Detail       leaf [A. thaliana] total seedlings gfs9
2255Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9
2258Detail       leaf [A. thaliana] total seedlings gfs9
2259Detail       leaf [A. thaliana] total seedlings gfs9
2269Detail       seedlings [A. thaliana] total tissue wild-type
2270Detail       seedlings [A. thaliana] total tissue wild-type
2271Detail       seedlings [A. thaliana] total tissue wild-type
2273Detail       seedlings [A. thaliana] total tissue wild-type
2274Detail       seedlings [A. thaliana] total tissue wild-type
2275Detail       seedlings [A. thaliana] total tissue wild-type
2286Detail        [A. thaliana] Clp C1 WT
2287Detail        [A. thaliana] Clp C1 WT
2291Detail        [A. thaliana] Clp C1 TRAP
2298Detail        [A. thaliana] Clp C1 WT
2301Detail        [A. thaliana] Clp C1 TRAP
2302Detail        [A. thaliana] Clp C1 WT
2304Detail        [A. thaliana] Clp C1 WT
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 15496452(nucleolus)
15821981(crude&pure 80S ribosome)
18538804(total leaf)
17934214(cytosolic ribosome)
17916636(root (NaCl stress))
17432890(leaf total membranes)
18814325(cotyledons)
19200160(flower-stage 12)
19546170(mature pollen grains)
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19260003(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
19334764(plasma membrane (cell culture))
19888209(80S polysomal fraction)
19376835(leaf phosphoproteins)
19329564(peroxisomes (leaf))
21533090(plasmodesmata-crude)
21325567(root-proteome (wt & det3))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

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