PPDB

PPDB	The Plant Proteome Database

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AT5G35210.1 PHD type transcription factor with transmembrane domain protein (PTM)

Lab Annot.

PHD finger transcription factor - dual loca. nucleus & envelope
Mapman: 27.3.67 RNA.regulation of transcription.putative transcription regulator

Curated Location

envelope-outer (Pubmed: 23198870 21934661 )
nucleus (Pubmed: 23198870 21934661 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G35210.2 11 Arabidopsis thaliana 0 1536 100 100 0 (0) _
AT5G22760.1 11 Arabidopsis thaliana 0 1578 67 77 0 (0) _
AT5G22760.3 11 Arabidopsis thaliana 0 1297 67 77 0 (0) _
Os11g05130.2 7 Oryza sativa 7E-143 1053 32 47 0 (0) _
Os11g05130.1 7 Oryza sativa 8E-143 1053 32 47 0 (0) _
Os07g46690.1 7 Oryza sativa 6E-114 1024 29 45 0 (0) _
GRMZM2G314661_P01 3.21 Zea mays 0 1739 32 47 4 (0) _
v1_GRMZM2G314661_P01 4a53 Zea mays 0 1739 32 47 2 (2) _
Zm00001eb406520_P001 agpv5 Zea mays 0 1216 37 53 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AT_hook(1) DDT(1) LBR_tudor(1) Peptidase_M50(1) PHD(4) PHD_2(3) WHIM1(1)
TargetP:	Cytoplasm (Class 2 C0.060; M0.214; S0.054; _0.881)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:	4 TMs
TAT position:
Length	1678 aa (-cTP 1669)
Molecular Weight	186.43 kDA(-cTP )
PI	7.75(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1870	Detail								Total leaf [A. thaliana]	Stroma	wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

12938931(Total chloroplast envelope)

Comparative Proteomics Data