PPDB

PPDB	The Plant Proteome Database

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AT5G28850.2 Calcium-binding EF-hand family protein

Lab Annot.

calcium-binding EF hand protein
Mapman: 30.3 signalling.calcium

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G28900.1 11 Arabidopsis thaliana 0 536 99 100 23 (6) _
AT1G54450.1 11 Arabidopsis thaliana 0 531 75 84 0 (0) _
AT5G44090.1 11 Arabidopsis thaliana 0 532 68 80 28 (15) _
Os10g33680.1 7 Oryza sativa 0 535 73 84 21 (21) _
Os02g09840.1 7 Oryza sativa 0 519 68 78 0 (0) _
Os05g05710.1 7 Oryza sativa 5E-21 321 24 45 0 (0) _
Zm00001eb045890_P004 agpv5 Zea mays 0 535 71 83 0 (0) _
Zm00001eb045890_P003 agpv5 Zea mays 0 535 71 83 0 (0) _
GRMZM2G148323_P01 3.21 Zea mays 0 535 71 83 55 (17) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF4187(1) EF-hand_1(4) EF-hand_13(1) EF-hand_5(3) EF-hand_6(4) EF-hand_7(4) EF-
TargetP:	Cytoplasm (Class 2 C0.062; M0.045; S0.017; _0.843)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	536 aa (-cTP 468)
Molecular Weight	61.98 kDA(-cTP )
PI	5.03(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2017	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2019	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2020	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2245	Detail								seedlings [A. thaliana]	total tissue	wild-type
2286	Detail								[A. thaliana]		Clp C1 WT
2300	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
20706207(contaminants cell cycle interactome (cell culture))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)

Comparative Proteomics Data