PPDB

PPDB	The Plant Proteome Database

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AT5G28740.1 Tetratricopeptide repeat (TPR)-like superfamily protein

Lab Annot.

transcription-coupled DNA repair protein-related
Mapman: 28.2 DNA.repair

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G45990.2 11 Arabidopsis thaliana 7E-16 373 23 44 0 (0) _
AT5G45990.1 11 Arabidopsis thaliana 9E-16 373 23 44 0 (0) _
AT5G41770.1 11 Arabidopsis thaliana 1E-14 356 23 44 6 (3) _
Os07g44970.1 7 Oryza sativa 0 924 65 79 19 (19) S
Os06g12910.1 7 Oryza sativa 0 758 51 68 0 (0) _
Os01g49270.1 7 Oryza sativa 0 760 43 59 0 (0) _
Zm00001eb110380_P002 agpv5 Zea mays 0 689 67 81 0 (0) _
Zm00001eb110380_P003 agpv5 Zea mays 0 504 67 81 0 (0) _
Zm00001eb110380_P001 agpv5 Zea mays 0 919 65 79 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	HAT(6) Mad3_BUB1_I(5) Suf(5) TPR_12(5) TPR_14(8) TPR_2(6) TPR_5(1) TPR_8(6)
TargetP:	Cytoplasm (Class 1 C0.098; M0.095; S0.089; _0.928)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	917 aa (-cTP 913)
Molecular Weight	107.05 kDA(-cTP )
PI	5.92(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1507	Detail								[A. thaliana]		wild-type
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
1535	Detail								leaf [A. thaliana]		wild-type
1548	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1577	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	WT
2320	Detail								[A. thaliana]	Thylakoids plastoglobule
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data