PPDB

The Plant Proteome Database

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AT5G28740.1   Tetratricopeptide repeat (TPR)-like superfamily protein

Lab Annot. transcription-coupled DNA repair protein-related
Mapman: 28.2 DNA.repair
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G45990.2 11Arabidopsis thaliana7E-1637323440 (0)_
AT5G45990.1 11Arabidopsis thaliana9E-1637323440 (0)_
AT5G41770.1 11Arabidopsis thaliana1E-1435623446 (3)_
Os07g44970.1 7Oryza sativa0924657919 (19)S
Os06g12910.1 7Oryza sativa075851680 (0)_
Os01g49270.1 7Oryza sativa076043590 (0)_
Zm00001eb110380_P002 agpv5Zea mays068967810 (0)_
Zm00001eb110380_P003 agpv5Zea mays050467810 (0)_
Zm00001eb110380_P001 agpv5Zea mays091965790 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: HAT(6) Mad3_BUB1_I(5) Suf(5) TPR_12(5) TPR_14(8) TPR_2(6) TPR_5(1) TPR_8(6)
TargetP: Cytoplasm (Class 1 C0.098; M0.095; S0.089; _0.928)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 917 aa (-cTP 913)
Molecular Weight 107.05 kDA(-cTP )
PI 5.92(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1507Detail        [A. thaliana] wild-type
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1535Detail       leaf [A. thaliana] wild-type
1548Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1577Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data


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