PPDB

The Plant Proteome Database

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AT5G28490.1   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)

Lab Annot.
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G04510.1 11Arabidopsis thaliana4E-8620076820 (0)C
AT1G07090.1 11Arabidopsis thaliana3E-7314569853 (0)_
AT2G31160.1 11Arabidopsis thaliana3E-7113085910 (0)C
Os01g61310.1 7Oryza sativa4E-6914376850 (0)C
Os05g28040.1 7Oryza sativa1E-6813181910 (0)_
Os02g41460.1 7Oryza sativa1E-6714379860 (0)_
GRMZM2G135332_P01 3.21Zea mays1E-7614573820 (0)_
v1_GRMZM2G135332_P01 4a53Zea mays1E-7614573820 (0)_
Zm00001eb368530_P001 agpv5Zea mays1E-7614573820 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF640(2) Tat(1)
TargetP: Chloroplast (Class 4 C0.837; M0.077; S0.005; _0.450)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 190 aa (-cTP 136)
Molecular Weight 21.65 kDA(-cTP 15.34)
PI 10.08(-cTP 10.09)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help