PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G27560.1   DUF1995 domain protein%2C putative (DUF1995)
Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G27560.3 11Arabidopsis thaliana03411001000 (0)C
AT5G27560.4 11Arabidopsis thaliana03411001000 (0)C
AT5G27560.2 11Arabidopsis thaliana033799990 (0)C
Os06g05390.1 7Oryza sativa4E-129257708710 (10)C
Os06g05390.2 7Oryza sativa5E-57133718910 (10)C
Os02g03670.1 7Oryza sativa2E-0722427410 (0)C
GRMZM2G051059_P05 3.21Zea mays5E-134254698629 (27)C
Zm00001eb377150_P003 agpv5Zea mays5E-13425469860 (0)C
Zm00001eb377150_P001 agpv5Zea mays6E-10625459730 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF1995(1)
TargetP: Chloroplast (Class 3 C0.617; M0.104; S0.071; _0.007)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 341 aa (-cTP 277) (-lTP 233)
Molecular Weight 38.05 kDA(-cTP 31.01)(-lTP 26.33)
PI 4.74(-cTP 4.54)(-lTP 5.459)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
326Detail       leaf [A. thaliana] chloroplast stromawild-type
327Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
339Detail       leaf [A. thaliana] chloroplast stromawild-type
873Detail       leaf [A. thaliana] chloroplast stromawild-type
874Detail       leaf [A. thaliana] chloroplast stromawild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1549Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1569Detail       leaf [A. thaliana] TiO2 thylakoid membranek1k3
1572Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1581Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1637Detail       leaf [A. thaliana] total leaf tissue stromaWild-type
1638Detail       leaf [A. thaliana] total leaf tissue stromaWild-type
1639Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
1640Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
1941Detail       leaf [A. thaliana] stroma WT stromawild-type
1942Detail       leaf [A. thaliana] stroma WT stromawild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
19995723(chloroplast reference proteome)
21311031(chloroplasts)
21515685(GreenCut2)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help