PPDB

PPDB	The Plant Proteome Database

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AT5G27530.1 Pectin lyase-like superfamily protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G35670.1 11 Arabidopsis thaliana 0 394 69 81 0 (0) S
AT5G44840.1 11 Arabidopsis thaliana 7E-145 391 53 71 0 (0) S
AT4G35670.2 11 Arabidopsis thaliana 6E-136 287 70 81 0 (0) C
Os05g46510.1 7 Oryza sativa 6E-89 370 37 55 0 (0) S
Os07g10740.1 7 Oryza sativa 5E-85 392 37 57 0 (0) S
Os07g10680.1 7 Oryza sativa 1E-82 366 40 59 0 (0) S
GRMZM2G004500_P01 3.21 Zea mays 4E-89 377 37 58 0 (0) S
Zm00001eb061830_P001 agpv5 Zea mays 4E-89 377 37 58 0 (0) S
v1_GRMZM2G004500_P01 4a53 Zea mays 4E-89 377 37 58 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	End_N_terminal(1) Glyco_hydro_28(1) Pectate_lyase_3(2)
TargetP:	Cytoplasm (Class 1 C0.020; M0.157; S0.157; _0.962)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:	1 TMs
TAT position:
Length	458 aa (-cTP 440)
Molecular Weight	49.65 kDA(-cTP )
PI	4.78(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data