PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G27140.1   NOP56-like pre RNA processing ribonucleoprotein
Lab Annot.
Mapman: 27.3.67 RNA.regulation of transcription.putative transcription regulator
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G27140.2 11Arabidopsis thaliana042599990 (0)S
AT5G27120.1 11Arabidopsis thaliana0424697723 (18)_
AT3G05060.1 11Arabidopsis thaliana0423667642 (26)_
Os03g22740.1 7Oryza sativa6E-176484577018 (18)_
Os03g22730.1 7Oryza sativa2E-174469587118 (18)_
Os03g22880.1 7Oryza sativa3E-79319436418 (18)_
Zm00001eb394750_P003 agpv5Zea mays9E-17348357710 (0)_
Zm00001eb394750_P002 agpv5Zea mays9E-17348357710 (0)_
Zm00001eb394750_P001 agpv5Zea mays9E-17348357710 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: E2_bind(3) Nop(1) NOP5NT(2)
TargetP: Secreted (Class 5 C0.073; M0.070; S0.536; _0.411)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 445 aa (-cTP 411)
Molecular Weight 49.38 kDA(-cTP )
PI 5.05(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

 17432890(leaf total membranes)
19200160(flower-stage 12)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help