PPDB

 The Plant Proteome Database

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AT5G27120.1   NOP56-like pre RNA processing ribonucleoprotein
Lab Annot. SAR DNA-binding protein, putative
Mapman: 27.3.67 RNA.regulation of transcription.putative transcription regulator
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G05060.1 11Arabidopsis thaliana0443899540 (39)_
AT5G27140.2 11Arabidopsis thaliana050563710 (0)S
AT5G27140.1 11Arabidopsis thaliana050563710 (0)S
Os03g22740.1 7Oryza sativa0486748718 (18)_
Os03g22730.1 7Oryza sativa0477758818 (18)_
Os03g22880.1 7Oryza sativa6E-115510415718 (18)_
Zm00001eb394750_P003 agpv5Zea mays048173870 (0)_
Zm00001eb394750_P002 agpv5Zea mays048173870 (0)_
Zm00001eb394750_P001 agpv5Zea mays048173870 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CDC45(1) Nop(1) NOP5NT(1) RR_TM4-6(1)
TargetP: Cytoplasm (Class 3 C0.075; M0.026; S0.291; _0.770)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 533 aa (-cTP 499)
Molecular Weight 58.75 kDA(-cTP )
PI 9.31(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1545Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1578Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 15496452(nucleolus)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help