PPDB

PPDB	The Plant Proteome Database

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AT5G26210.1 alfin-like 4

Lab Annot.

PHD finger protein
Mapman: 27.3.2 RNA.regulation of transcription.Alfin-like

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G42790.1 11 Arabidopsis thaliana 9E-120 257 73 85 6 (1) _
AT5G20510.1 11 Arabidopsis thaliana 3E-119 259 72 86 0 (0) _
AT2G02470.1 11 Arabidopsis thaliana 3E-110 249 71 82 1 (0) _
Os05g34640.1 7 Oryza sativa 2E-110 255 67 79 0 (0) _
Os02g35600.1 7 Oryza sativa 2E-110 248 66 80 3 (3) _
Os11g14010.1 7 Oryza sativa 3E-110 258 68 81 2 (2) _
GRMZM2G038066_P01 3.21 Zea mays 8E-117 250 66 78 0 (0) _
Zm00001eb327240_P002 agpv5 Zea mays 8E-117 250 66 78 0 (0) _
v1_GRMZM2G038066_P01 4a53 Zea mays 8E-117 250 66 78 6 (6) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Alfin(1) C1_1(1) C1_2(2) DUF4746(1) NPR3(1) PHD(1) Pox_Ag35(1)
TargetP:	Cytoplasm (Class 2 C0.155; M0.161; S0.099; _0.841)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	255 aa (-cTP 232)
Molecular Weight	28.78 kDA(-cTP )
PI	5.01(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1619	Detail								[A. thaliana]		m48
1620	Detail								[A. thaliana]		m48
1621	Detail								[A. thaliana]		m48
2006	Detail								leaf [A. thaliana]	over expressed M48 plastoglobule	M48
2251	Detail								seedlings [A. thaliana]	total tissue	wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19525416(leaf (wt and clpr4-1 mutant))
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
20813957(SUMO proteome)

Comparative Proteomics Data