PPDB

The Plant Proteome Database

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AT5G26210.1   alfin-like 4

Lab Annot. PHD finger protein
Mapman: 27.3.2 RNA.regulation of transcription.Alfin-like
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G42790.1 11Arabidopsis thaliana9E-12025773853 (1)_
AT5G20510.1 11Arabidopsis thaliana3E-11925972860 (0)_
AT2G02470.1 11Arabidopsis thaliana3E-11024971821 (0)_
Os05g34640.1 7Oryza sativa2E-11025567790 (0)_
Os02g35600.1 7Oryza sativa2E-11024866803 (3)_
Os11g14010.1 7Oryza sativa3E-11025868812 (2)_
GRMZM2G038066_P01 3.21Zea mays8E-11725066780 (0)_
Zm00001eb327240_P002 agpv5Zea mays8E-11725066780 (0)_
v1_GRMZM2G038066_P01 4a53Zea mays8E-11725066786 (6)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Alfin(1) C1_1(1) C1_2(2) DUF4746(1) NPR3(1) PHD(1) Pox_Ag35(1)
TargetP: Cytoplasm (Class 2 C0.155; M0.161; S0.099; _0.841)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 255 aa (-cTP 232)
Molecular Weight 28.78 kDA(-cTP )
PI 5.01(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1619Detail        [A. thaliana] m48
1620Detail        [A. thaliana] m48
1621Detail        [A. thaliana] m48
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2251Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19525416(leaf (wt and clpr4-1 mutant))
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
20813957(SUMO proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help