PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G25940.1   early nodulin-like protein

Lab Annot. early nodulin-related
Mapman: 33.99 development.unspecified
Curated Location not plastid (supported by in-house exprements)

TAIR curated location: mitochondrion14671022
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os02g13380.1 7Oryza sativa1E-229252658 (8)C
Os06g04990.1 7Oryza sativa1E-166564810 (0)M
Os06g05020.1 7Oryza sativa1E-166564810 (0)M
v1_GRMZM2G085750_P01 4a53Zea mays6E-289454695 (5)_
GRMZM2G085750_P01 3.21Zea mays6E-289454698 (8)_
Zm00001eb205020_P001 agpv5Zea mays9E-288755710 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: ENOD93(1)
TargetP: Cytoplasm (Class 3 C0.036; M0.231; S0.006; _0.828)
Predotar:
Subcel. Location:
TM-HMM prediction: 2 TMs
Aramemnon: 2 TMs
TAT position:
Length 115 aa (-cTP 68)
Molecular Weight 12.27 kDA(-cTP )
PI 10.27(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1615Detail       Natural Senescence leaf [A. thaliana]  
1616Detail       Natural Senescence leaf [A. thaliana]  
1620Detail        [A. thaliana] m48
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2021Detail       leaf [A. thaliana] total leaf tissue  
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

MitoDB(Mitochondrial proteome)
15276431(Mitochondrial proteome)
15276431(mitochondrial membranes-suspension cells)
17293592(total seedlings û light and dark grown)
17660356(tonoplast (Brassica oleracea buds))
19995728(proplastid (Brassica napus))
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
20706207(contaminants cell cycle interactome (cell culture))
20061580(chloroplast envelope (inner+outer))
21311031(mitochondria)
21841088(mitochondria (2DE native gel))
21173025(root proteome)
21472856(mitochondria-LC-MS/MS-uncurated)
21472856(mitochondrial-reference-proteome-Millar-Nov2011)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help