PPDB

 The Plant Proteome Database

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AT5G25757.1   RNA polymerase I-associated factor PAF67
Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G25754.1 11Arabidopsis thaliana051410010058 (21)_
Os05g13950.1 7Oryza sativa0499728633 (33)_
Os01g12870.1 7Oryza sativa050669857 (7)_
Os05g13950.2 7Oryza sativa0347748611 (11)_
v1_GRMZM2G153181_P01 4a53Zea mays0499728646 (46)_
Zm00001eb119330_P001 agpv5Zea mays049972860 (0)_
GRMZM2G153181_P01 3.21Zea mays04997286114 (45)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Paf67(1)
TargetP: Cytoplasm (Class 1 C0.078; M0.085; S0.128; _0.957)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 514 aa (-cTP 475)
Molecular Weight 60.18 kDA(-cTP )
PI 5.88(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1197Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2297Detail        [A. thaliana] Clp C1 WT
2303Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

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