PPDB

The Plant Proteome Database

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AT5G25540.1   CTC-interacting domain 6

Lab Annot.
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G25540.3 11Arabidopsis thaliana3E-1271751001000 (0)_
AT5G25540.2 11Arabidopsis thaliana4E-90126991000 (0)_
AT5G11440.1 11Arabidopsis thaliana2E-4118150620 (0)_
Zm00001eb373910_P002 agpv5Zea mays4E-073951740 (0)_
Zm00001eb278590_P001 agpv5Zea mays7E-076838550 (0)C
GRMZM2G392700_P01 3.21Zea mays7E-076838550 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF4107(1) DUF433(1)
TargetP: Cytoplasm (Class 5 C0.288; M0.189; S0.155; _0.438)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 175 aa (-cTP 164)
Molecular Weight 19.35 kDA(-cTP )
PI 4.37(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2046Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2047Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2048Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2049Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data


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