PPDB

 The Plant Proteome Database

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AT5G25230.1   Ribosomal protein S5/Elongation factor G/III/V family protein
Lab Annot. elongation factor Tu protein
Mapman: 29.2.4 protein.synthesis.elongation
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G25230.2 11Arabidopsis thaliana09731001000 (0)_
AT1G06220.2 11Arabidopsis thaliana0991939552 (37)_
AT1G06220.1 11Arabidopsis thaliana0991939552 (37)_
Os06g40600.1 7Oryza sativa0997758435 (35)_
Os04g02820.1 7Oryza sativa08543757127 (127)_
Os04g02820.2 7Oryza sativa08543757127 (127)_
Zm00001eb386630_P001 agpv5Zea mays099575850 (0)_
v1_GRMZM2G316232_P01 4a53Zea mays0536657532 (32)_
GRMZM2G316232_P01 3.21Zea mays0536657514 (14)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: EFG_C(1) EFG_III(1) EFG_IV(1) EFTUD2(1) GTP_EFTU(1) GTP_EFTU_D2(1) MMR_HSR1(1) R
TargetP: Cytoplasm (Class 2 C0.130; M0.119; S0.141; _0.875)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 973 aa (-cTP 955)
Molecular Weight 108.80 kDA(-cTP )
PI 5.09(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1423Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1757Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1758Detail       leaf [A. thaliana] total leaf tissue DXS_Flag+fosmidomycin
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 15496452(nucleolus)
18463617(suspension cells-phosphorylated proteins)
19200160(flower-stage 12)
19525416(leaf (wt and clpr4-1 mutant))
20706207(contaminants cell cycle interactome (cell culture))
21533090(plasmodesmata-crude)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help