PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G25090.1   early nodulin-like protein 13

Lab Annot. plastocyanin-like domain-containing protein
Mapman: 26.19 misc.plastocyanin-like
Curated Location plasma membrane

TAIR curated location: anchored to membrane12068095,12805588
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G31840.1 11Arabidopsis thaliana2E-48167476838 (37)S
AT2G25060.1 11Arabidopsis thaliana8E-48178506557 (54)S
AT4G30590.1 11Arabidopsis thaliana2E-4312951700 (0)S
Os08g17160.1 7Oryza sativa2E-29135406222 (22)S
Os02g06670.1 7Oryza sativa7E-2911942680 (0)S
Os06g46740.1 7Oryza sativa3E-2712340610 (0)S
Zm00001eb232740_P001 agpv5Zea mays2E-2713838580 (0)S
v1_GRMZM2G167578_P01 4a53Zea mays2E-2713838580 (0)S
GRMZM2G167578_P01 3.21Zea mays2E-2713838580 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Cu_bind_like(1) MazE_antitoxin(1)
TargetP: Secreted (Class 1 C0.017; M0.021; S0.977; _0.019)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 186 aa (-cTP 158)
Molecular Weight 19.77 kDA(-cTP )
PI 9.03(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
2225Detail       leaf [A. thaliana] total leaf tissue Clp P3 trap

* For details about the exprimental sources click here.

Published Proteomics Data

12805588(GBI-anchored-callus)
14517339(GPI anchored suspension cells)
16602701(GPI-anchored Plasma membrane suspension cells)
17317660(Plasma Membrane proteome)
17644812(plasma membrane - suspension cells)
WallDB-E.Jamet(cell wall reference proteome)
21533090(plasmodesmata-crude)
21173025(root proteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help