PPDB

The Plant Proteome Database

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AT5G25070.1   neurofilament light protein

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os08g40450.1 7Oryza sativa1E-10151042661 (1)_
Zm00001eb174530_P001 agpv5Zea mays6E-11174537570 (0)_
GRMZM2G046503_P01 3.21Zea mays6E-11174537570 (0)_
v1_GRMZM2G168849_P01 4a53Zea mays3E-9254540640 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF948(6) Spindle_Spc25(2) UVR(4)
TargetP: Cytoplasm (Class 2 C0.162; M0.116; S0.062; _0.868)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 736 aa (-cTP 697)
Molecular Weight 82.14 kDA(-cTP )
PI 4.66(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1196Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1214Detail       leaf [A. thaliana] co-IP RH3 stromawild-type
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1471Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clps (rep. 1-2)
1472Detail       leaf [A. thaliana] co-IP GST stroma clps (rep. 1-2)
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
22060019(phosphoproteome - N-starved seedlings)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help