PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G24850.1   cryptochrome 3

Lab Annot. DNA photolyase
Mapman: 28.2 DNA.repair
Curated Location plastid nucleoid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G47590.1 11Arabidopsis thaliana2E-6131139550 (0)_
AT3G15620.1 11Arabidopsis thaliana2E-4646229481 (1)M
AT3G15620.2 11Arabidopsis thaliana6E-4141429481 (1)M
Os06g45100.1 7Oryza sativa053366780 (0)C
Os03g22330.1 7Oryza sativa1E-6233335580 (0)C
Os02g41550.1 7Oryza sativa1E-3347629460 (0)M
Zm00001eb389640_P002 agpv5Zea mays051167810 (0)C
GRMZM2G103897_P01 3.21Zea mays051167819 (9)C
v1_GRMZM2G103897_P01 4a53Zea mays051167815 (5)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DNA_photolyase(2) FAD_binding_7(1)
TargetP: Mitochondria (Class 5 C0.696; M0.707; S0.013; _0.027)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 569 aa (-cTP 530)
Molecular Weight 64.98 kDA(-cTP )
PI 9.21(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19995723(chloroplast reference proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help