PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G24460.1   RING-H2 zinc finger protein

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os06g49780.1 7Oryza sativa3E-52231465827 (27)C
Zm00001eb272540_P001 agpv5Zea mays1E-3920547640 (0)C
GRMZM2G048537_P01 3.21Zea mays1E-3920547640 (0)C
v1_GRMZM2G048537_P01 4a53Zea mays1E-3920547640 (0)C

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: NUDIX(1)
TargetP: Cytoplasm (Class 5 C0.480; M0.054; S0.002; _0.563)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 300 aa (-cTP 276)
Molecular Weight 33.45 kDA(-cTP )
PI 9.21(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2316Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

14595688(Cell Wall proteome)
19376835(leaf phosphoproteins)
WallDB-E.Jamet(cell wall reference proteome)
21166475(cytosolic-fractions-crude)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help