PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G24420.1   6-phosphogluconolactonase 5

Lab Annot. 6-phosphogluconolactonase 5 (6PGL-5)
Mapman: 7.1.2 OPP.oxidative PP.6-phosphogluconolactonase
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G49360.1 11Arabidopsis thaliana1E-12225267785 (5)_
AT5G24410.1 11Arabidopsis thaliana5E-12225068780 (0)_
AT5G24400.1 11Arabidopsis thaliana3E-882505170145 (117)C
Os09g35970.1 7Oryza sativa9E-92254526924 (24)C
Os08g43370.1 7Oryza sativa2E-85254506836 (36)_
Os07g41280.1 7Oryza sativa8E-6925344630 (0)_
Zm00001eb103260_P003 agpv5Zea mays1E-9425554700 (0)C
v1_GRMZM2G148769_P01 4a53Zea mays1E-93255536980 (80)C
v1_GRMZM2G148769_P02 4a53Zea mays1E-93255536980 (80)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Glucosamine_iso(1)
TargetP: Cytoplasm (Class 2 C0.051; M0.150; S0.255; _0.864)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 252 aa (-cTP 233)
Molecular Weight 28.48 kDA(-cTP )
PI 5.82(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
622Detail       leaf [A. thaliana] total leaf tissue wild-type
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1449Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 2)
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

20377703(flowers (COI1-regulated proteins))
19200160(flower-stage 12)
19546170(mature pollen grains)
20118269(developing seeds)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help