PPDB

PPDB	The Plant Proteome Database

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AT5G24120.1 sigma factor E

Lab Annot.

SIG5 sigma factor (SigE)
Mapman: 27.2 RNA.transcription

Curated Location

plastid stroma (Pubmed: 23198870 14976253 18431481 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G24120.2 11 Arabidopsis thaliana 0 517 100 100 0 (0) C
AT5G24120.3 11 Arabidopsis thaliana 0 517 100 100 0 (0) C
AT1G08540.1 11 Arabidopsis thaliana 3E-38 288 31 54 0 (0) C
Os05g50930.1 7 Oryza sativa 2E-153 424 52 73 0 (0) C
Os05g50930.2 7 Oryza sativa 2E-112 361 47 70 0 (0) C
Os03g16430.2 7 Oryza sativa 8E-28 291 28 50 0 (0) C
GRMZM2G077436_P01 3.21 Zea mays 1E-151 428 53 72 1 (1) C
v1_GRMZM2G077436_P01 4a53 Zea mays 1E-151 428 53 72 0 (0) C
Zm00001eb297590_P002 agpv5 Zea mays 2E-147 428 52 71 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	GerE(1) Response_reg_2(1) Sigma70_r2(1) Sigma70_r3(3) Sigma70_r4(3) Sigma70_r4_2
TargetP:	Chloroplast (Class 5 C0.404; M0.113; S0.034; _0.204)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	517 aa (-cTP 483)
Molecular Weight	58.81 kDA(-cTP 55.35)
PI	9.91(-cTP 9.85)

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

22060019(phosphoproteome - N-starved seedlings)

Comparative Proteomics Data