PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT5G24105.1   arabinogalactan protein 41

Lab Annot.
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G46330.1 11Arabidopsis thaliana1E-205174900 (0)S
AT3G61640.1 11Arabidopsis thaliana4E-206163780 (0)S
AT5G53250.1 11Arabidopsis thaliana5E-194875870 (0)S
Os01g46850.1 7Oryza sativa3E-165367790 (0)S
Os05g12580.1 7Oryza sativa8E-1027851000 (0)S
Os02g11880.1 7Oryza sativa6E-092975890 (0)S
Zm00001eb359480_P001 agpv5Zea mays7E-1026921000 (0)S
GRMZM2G020131_P01 3.21Zea mays7E-1026921000 (0)S
v1_GRMZM2G020131_P01 4a53Zea mays7E-1026921000 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: AGP(1) DUF4220(1) DUF4231(1)
TargetP: Secreted (Class 1 C0.007; M0.060; S0.987; _0.037)
Predotar:
Subcel. Location:
TM-HMM prediction: 2 TMs
Aramemnon: 1 TMs
TAT position:
Length 63 aa (-cTP 39)
Molecular Weight 6.57 kDA(-cTP )
PI 5.94(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

WallDB-E.Jamet(cell wall reference proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help