PPDB

 The Plant Proteome Database

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AT5G24060.1   Pentatricopeptide repeat (PPR) superfamily protein
Lab Annot. HugZ-1 & PPR
Mapman: 35.2 not assigned.unknown
Curated Location plastid (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G24060.2 11Arabidopsis thaliana04949797184 (25)C
AT5G24060.3 11Arabidopsis thaliana04341001000 (0)_
AT3G49140.1 11Arabidopsis thaliana0505617480 (15)C
Os11g34130.1 7Oryza sativa1E-8142937580 (0)C
Os01g67370.1 7Oryza sativa2E-5546130490 (0)M
Os01g67370.3 7Oryza sativa4E-3739528470 (0)M
v1_GRMZM2G423831_P01 4a53Zea mays3E-8841337591 (1)C
Zm00001eb197710_P001 agpv5Zea mays3E-8841337590 (0)C
GRMZM2G423831_P01 3.21Zea mays3E-8841337594 (4)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Astro_capsid_p(1)
TargetP: Chloroplast (Class 5 C0.386; M0.095; S0.056; _0.307)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 481 aa (-cTP 423)
Molecular Weight 53.72 kDA(-cTP 47.25)
PI 4.58(-cTP 4.37)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2265Detail       leaf [A. thaliana] stroma Clp stromaClp C1 trap
2267Detail       leaf [A. thaliana] stroma Clp Clp C1 TRAP
2289Detail        [A. thaliana] Clp C1 TRAP
2290Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2299Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2305Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help