PPDB

PPDB	The Plant Proteome Database

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AT5G23670.1 long chain base2

Lab Annot.

Mapman: 11.8.1.2 lipid metabolism.exotics (steroids, squalene etc).sphingolipids.serine C-palmitoyltransferase

Curated Location

TAIR curated location: endoplasmic reticulum & membrane11726713

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G23670.2 11 Arabidopsis thaliana 0 489 100 100 0 (0) S
AT3G48780.1 11 Arabidopsis thaliana 0 489 91 95 0 (0) S
AT3G48780.2 11 Arabidopsis thaliana 0 489 91 95 0 (0) S
Os11g31640.1 7 Oryza sativa 0 485 81 91 0 (0) S
Os01g70380.1 7 Oryza sativa 0 488 81 90 0 (0) S
Os01g70370.1 7 Oryza sativa 0 496 76 87 0 (0) S
GRMZM2G010202_P01 3.21 Zea mays 0 489 80 89 0 (0) S
Zm00001eb363730_P001 agpv5 Zea mays 0 489 80 89 0 (0) S
v1_GRMZM2G010202_P01 4a53 Zea mays 0 489 80 89 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Aminotran_1_2(1) Aminotran_5(1) Beta_elim_lyase(1) Cys_Met_Meta_PP(1) DegT_DnrJ_
TargetP:	Secreted (Class 3 C0.004; M0.233; S0.745; _0.298)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	489 aa (-cTP 483)
Molecular Weight	54.29 kDA(-cTP )
PI	8.94(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

14760709(Vacuolar proteome)
19546170(mature pollen grains)

Comparative Proteomics Data